PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_25726E5E7.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 296aa    MW: 32569.5 Da    PI: 6.1767
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_25726E5E7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-161865148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W++eEde+l+  + ++G g+W++++r  g++R++k+c++rw++yl
  Traes_1AL_25726E5E7.1 18 KGLWSPEEDEKLYSHILRYGVGCWSSVPRLAGLHRCGKSCRLRWLNYL 65
                           678*******************************************97 PP

2Myb_DNA-binding52.31.3e-1671114146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg +++eE++ +v +++ lG++ W+ Ia++++ gRt++++k++w++
  Traes_1AL_25726E5E7.1  71 RGTFSQEEEDHIVALHQILGNR-WSQIASHLP-GRTDNEIKNFWNS 114
                            899*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-231168IPR009057Homeodomain-like
PROSITE profilePS5129417.6271365IPR017930Myb domain
SuperFamilySSF466892.81E-2915112IPR009057Homeodomain-like
SMARTSM007173.9E-131767IPR001005SANT/Myb domain
PfamPF002492.4E-141865IPR001005SANT/Myb domain
CDDcd001675.11E-112165No hitNo description
PROSITE profilePS5129424.79466120IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2669120IPR009057Homeodomain-like
SMARTSM007171.6E-1470118IPR001005SANT/Myb domain
PfamPF002491.5E-1471114IPR001005SANT/Myb domain
CDDcd001679.56E-1173113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGRPTSGGVQ MQQPKLRKGL WSPEEDEKLY SHILRYGVGC WSSVPRLAGL HRCGKSCRLR  60
WLNYLRPDLK RGTFSQEEED HIVALHQILG NRWSQIASHL PGRTDNEIKN FWNSCIKKKL  120
RKQGIDPATH KPMAAGMITA ATAALPDAEA VDRKPLAAAA DGSLAPKQSP EFDPFPVCAD  180
YGGGFAGDLG AANATALYVQ FGDCKDGAHG DTGFGAADYS CVLDVSENLG YGESSSNSSN  240
WNYGREVGSV LDGEVLHWAK AEMERQHDEP PEHKFALPCQ EQSLLANFEF NLEQYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29141203108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0669460.0KM066946.1 Triticum aestivum R2R3-MYB transcription factor (MYB86) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961344.11e-128PREDICTED: myb-related protein Hv33-like
SwissprotP200271e-157MYB3_HORVU; Myb-related protein Hv33
TrEMBLW4ZMP70.0W4ZMP7_WHEAT; Uncharacterized protein
STRINGSi022730m1e-127(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-68myb domain protein 86
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]